Application Productivity and Performance Evaluation of Transparent Locality-aware One-sided Communication Primitives

Huan Zhou, José Gracia

Abstract


Nowadays, the individual nodes of a distributed parallel computer consist of multi- or many-core processors allowing to execute more than one process per node. The large difference in communication speed within a node through shared memory, versus across nodes through the network interconnect, requires to use locality-aware communication schemes for any efficient distributed application. However, writing an efficient locality-aware MPI code is complex and error-prone, because the developer has to use very different APIs for communication operations within and across nodes, respectively, and manage inter-process synchronization. In this paper, we analyze and enhance a recent one-sided communication model, namely DART-MPI, which is implemented on top of MPI-3. In this runtime system, the complexities of handling locality-awareness of MPI memory access operations, either remote or local, and the related synchronization calls are hidden inside the related DART-MPI interfaces resulting in concise code and improved application and developer productivity. We have carried out in-depth evaluation of our DART-MPI system. Foremost, a micro benchmark is conducted to help understanding the prime performance overhead of implementing APIs in DART-MPI system, which is small and becomes negligible with the growing message sizes. We then compare the performance of DART-MPI and flat MPI without locality awareness, in particular blocking and non-blocking memory operations, using a realistic scientific application on a large-scale supercomputer. The comparison demonstrates that in most cases the DART-MPI version of this application shows better performance than the flat MPI version. Further, we compare the DART-MPI version to a functionally equivalent MPI version, which thus includes code to deal with data-locality, and show that DART-MPI realizes almost the full potential of highly optimized MPI while maintaining high productivity for non-expert programmers.


Keywords


Locality-awareness; MPI; DART; DART-MPI; blocking; non-blocking; one-sided communication; programmer productivity

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